Ligand-Gated ion Channel [Source:NCBI gene;Acc:183331]
Chromosome X: 10,454,260-10,460,506 forward strand.
WBcel235:BX284606.5
This gene has 10 transcripts (splice variants) and 38 paralogues.
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| C39B10.2b.1 | - | 1841 | 564aa | C39B10.2b.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A7LPG1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| C39B10.2a.1 | lgc-41-210 | 1780 | 540aa | C39B10.2a.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q18518 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| C39B10.2f.1 | - | 1779 | 521aa | C39B10.2f.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A4V0IND2 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| C39B10.2c.1 | - | 1776 | 537aa | C39B10.2c.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A4V0IK65 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| C39B10.2i.1 | - | 1711 | 501aa | C39B10.2i.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A4V0IK97 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| C39B10.2d.1 | - | 1704 | 567aa | C39B10.2d.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A4V0IK40 | APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
| C39B10.2e.1 | - | 1701 | 524aa | C39B10.2e.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A4V0IKL0 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| C39B10.2j.1 | - | 1693 | 498aa | C39B10.2j.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A4V0IJ17 | - |
| C39B10.2g.1 | - | 1656 | 551aa | C39B10.2g.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A4V0IN65 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| C39B10.2h.1 | - | 1647 | 548aa | C39B10.2h.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A4V6Z7Z1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
