Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: vhp-1 WBGene00006923

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Description

Protein-tyrosine-phosphatase; Tyrosine-protein phosphatase vhp-1 [Source:NCBI gene;Acc:173904]

Location

Chromosome II: 5,323,276-5,340,829 forward strand.

WBcel235:BX284602.5

About this gene

This gene has 8 transcripts (splice variants), 49 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
F08B1.1b.1	-	2611	606aa	F08B1.1b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q10038	-
F08B1.1a.1	-	2559	657aa	F08B1.1a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q10038	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
F08B1.1a.2	-	2169	657aa	F08B1.1a.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q10038	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
F08B1.1e.1	-	1986	661aa	F08B1.1e.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2C9C380	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
F08B1.1d.1	-	1761	586aa	F08B1.1d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2C9C2Y5	-
F08B1.1f.1	-	1509	502aa	F08B1.1f.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2C9C318	-
F08B1.1g.1	-	1347	448aa	F08B1.1g.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2C9C3G0	-
F08B1.1c	-	1577	No protein	-	A non-coding gene.ncRNA	-	-

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Summary

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