IF rod domain-containing protein; Intermediate Filament, C; Intermediate filament protein ifc-2 [Source:NCBI gene;Acc:180414]
Chromosome X: 642,156-654,904 reverse strand.
WBcel235:BX284606.5
This gene has 7 transcripts (splice variants) and 9 paralogues.
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| M6.1a.1 | - | 4317 | 1141aa | M6.1a.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q21067 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| M6.1e.1 | - | 4020 | 1339aa | M6.1e.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A5E4LYE2 | APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, |
| M6.1a.2 | - | 4016 | 1141aa | M6.1a.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q21067 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| M6.1b.1 | - | 3859 | 1261aa | M6.1b.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q21067 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| M6.1f.1 | - | 2119 | 502aa | M6.1f.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A5E4M3F7 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| M6.1c.1 | - | 2097 | 698aa | M6.1c.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A7I9BEY5 | - |
| M6.1d.1 | - | 1979 | 622aa | M6.1d.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | G8JY94 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
