Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Cpsf6 MGP_PahariEiJ_G0031253

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Description

cleavage and polyadenylation specific factor 6 [Source:MGI Symbol;Acc:MGI:1913948]

Location

Chromosome 9: 59,142,949-59,182,098 forward strand.

PAHARI_EIJ_v1.1:LT608291.1

About this gene

This gene has 8 transcripts (splice variants), 195 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
MGP_PahariEiJ_T0087840.1	Cpsf6-204	2161	565aa	MGP_PahariEiJ_P0087840	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_PahariEiJ_T0087839.1	Cpsf6-203	6406	507aa	MGP_PahariEiJ_P0087839	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0087841.1	Cpsf6-205	3709	528aa	MGP_PahariEiJ_P0087841	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0087838.1	Cpsf6-202	2131	528aa	MGP_PahariEiJ_P0087838	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0087844.1	Cpsf6-208	448	38aa	MGP_PahariEiJ_P0087844	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0087837.1	Cpsf6-201	377	91aa	MGP_PahariEiJ_P0087837	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0087843.1	Cpsf6-207	586	139aa	MGP_PahariEiJ_P0087843	Nonsense mediated decay	-
MGP_PahariEiJ_T0087842.1	Cpsf6-206	2527	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

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Summary

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