Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Prrx1 MGP_PahariEiJ_G0028019

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Description

paired related homeobox 1 [Source:NCBI gene;Acc:110321238]

Location

Chromosome 5: 136,018,655-136,085,839 reverse strand.

PAHARI_EIJ_v1.1:LT608292.1

About this gene

This gene has 4 transcripts (splice variants), 219 orthologues and 46 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
MGP_PahariEiJ_T0076089.1	Prrx1-202	738	245aa	MGP_PahariEiJ_P0076089	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_PahariEiJ_T0076090.1	Prrx1-203	6545	200aa	MGP_PahariEiJ_P0076090	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0076088.1	Prrx1-201	1335	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
MGP_PahariEiJ_T0076091.1	Prrx1-204	2368	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

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Summary

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