Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: Lhx9 MGP_PahariEiJ_G0027899

.

Description

LIM homeobox 9 [Source:NCBI gene;Acc:110322115]

Location

Chromosome 5: 113,007,245-113,031,497 reverse strand.

PAHARI_EIJ_v1.1:LT608292.1

About this gene

This gene has 7 transcripts (splice variants), 201 orthologues and 21 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
MGP_PahariEiJ_T0075465.1	Lhx9-205	1233	410aa	MGP_PahariEiJ_P0075465	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_PahariEiJ_T0075461.1	Lhx9-201	4952	330aa	MGP_PahariEiJ_P0075461	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0075462.1	Lhx9-202	4566	311aa	MGP_PahariEiJ_P0075462	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0075463.1	Lhx9-203	4516	311aa	MGP_PahariEiJ_P0075463	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0075464.1	Lhx9-204	2067	397aa	MGP_PahariEiJ_P0075464	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0075467.1	Lhx9-207	1057	75aa	MGP_PahariEiJ_P0075467	Nonsense mediated decay	-
MGP_PahariEiJ_T0075466.1	Lhx9-206	1914	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

.

Summary

.

.