Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Vangl1 MGP_PahariEiJ_G0026881

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Description

VANGL planar cell polarity protein 1 [Source:NCBI gene;Acc:110320397]

Location

Chromosome 4: 91,958,901-92,006,821 reverse strand.

PAHARI_EIJ_v1.1:LT608287.1

About this gene

This gene has 6 transcripts (splice variants), 264 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
MGP_PahariEiJ_T0070502.1	Vangl1-202	1875	526aa	MGP_PahariEiJ_P0070502	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_PahariEiJ_T0070501.1	Vangl1-201	821	252aa	MGP_PahariEiJ_P0070501	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0070505.1	Vangl1-205	592	137aa	MGP_PahariEiJ_P0070505	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0070506.1	Vangl1-206	340	10aa	MGP_PahariEiJ_P0070506	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0070504.1	Vangl1-204	472	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
MGP_PahariEiJ_T0070503.1	Vangl1-203	618	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

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Summary

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