Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: Col11a2 MGP_PahariEiJ_G0020438

.

Description

collagen, type XI, alpha 2 [Source:MGI Symbol;Acc:MGI:88447]

Location

Chromosome 18: 1,944,826-1,972,215 forward strand.

PAHARI_EIJ_v1.1:LT608302.1

About this gene

This gene has 8 transcripts (splice variants), 201 orthologues and 37 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
MGP_PahariEiJ_T0043683.1	Col11a2-202	5709	1689aa	MGP_PahariEiJ_P0043683	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_PahariEiJ_T0043682.1	Col11a2-201	6020	1650aa	MGP_PahariEiJ_P0043682	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0043684.1	Col11a2-203	5607	1655aa	MGP_PahariEiJ_P0043684	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0043686.1	Col11a2-205	2726	771aa	MGP_PahariEiJ_P0043686	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0043685.1	Col11a2-204	2091	624aa	MGP_PahariEiJ_P0043685	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0043687.1	Col11a2-206	426	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
MGP_PahariEiJ_T0043689.1	Col11a2-208	836	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_PahariEiJ_T0043688.1	Col11a2-207	351	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

.

Summary

.

.