Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Tm6sf1 MGP_PahariEiJ_G0013151

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Description

transmembrane 6 superfamily member 1 [Source:NCBI gene;Acc:110338117]

Location

Chromosome 1: 53,384,185-53,409,572 forward strand.

PAHARI_EIJ_v1.1:LT608296.1

About this gene

This gene has 8 transcripts (splice variants), 199 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
MGP_PahariEiJ_T0017337.1	Tm6sf1-201	2220	370aa	MGP_PahariEiJ_P0017337	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_PahariEiJ_T0017342.1	Tm6sf1-206	1062	279aa	MGP_PahariEiJ_P0017342	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0017340.1	Tm6sf1-204	2241	161aa	MGP_PahariEiJ_P0017340	Nonsense mediated decay	-
MGP_PahariEiJ_T0017339.1	Tm6sf1-203	678	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
MGP_PahariEiJ_T0017338.1	Tm6sf1-202	3216	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_PahariEiJ_T0017343.1	Tm6sf1-207	1971	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_PahariEiJ_T0017344.1	Tm6sf1-208	751	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_PahariEiJ_T0017341.1	Tm6sf1-205	984	327aa	MGP_PahariEiJ_P0017341	Unknown likely coding	-

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Summary

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