Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Cacna1a MGP_CAROLIEiJ_G0031301

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Description

calcium voltage-gated channel subunit alpha1 A [Source:NCBI gene;Acc:110299941]

Location

Chromosome 8: 75,730,048-75,977,194 forward strand.

CAROLI_EIJ_v1.1:LT608237.1

About this gene

This gene has 11 transcripts (splice variants), 284 orthologues and 26 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
MGP_CAROLIEiJ_T0085239.1	Cacna1a-202	7928	2367aa	MGP_CAROLIEiJ_P0085239	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_CAROLIEiJ_T0085240.1	Cacna1a-203	7590	2320aa	MGP_CAROLIEiJ_P0085240	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_CAROLIEiJ_T0085243.1	Cacna1a-206	1330	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
MGP_CAROLIEiJ_T0085248.1	Cacna1a-211	549	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
MGP_CAROLIEiJ_T0085247.1	Cacna1a-210	1742	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_CAROLIEiJ_T0085238.1	Cacna1a-201	1122	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_CAROLIEiJ_T0085246.1	Cacna1a-209	1118	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_CAROLIEiJ_T0085245.1	Cacna1a-208	731	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_CAROLIEiJ_T0085244.1	Cacna1a-207	594	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_CAROLIEiJ_T0085242.1	Cacna1a-205	6385	1891aa	MGP_CAROLIEiJ_P0085242	Unknown likely coding	-
MGP_CAROLIEiJ_T0085241.1	Cacna1a-204	6321	1924aa	MGP_CAROLIEiJ_P0085241	Unknown likely coding	-

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Summary

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