Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Ptpro MGP_CAROLIEiJ_G0029008

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Description

protein tyrosine phosphatase receptor type O [Source:NCBI gene;Acc:110296007]

Location

Chromosome 6: 135,245,636-135,453,001 forward strand.

CAROLI_EIJ_v1.1:LT608245.1

About this gene

This gene has 8 transcripts (splice variants), 225 orthologues and 33 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
MGP_CAROLIEiJ_T0076567.1	Ptpro-203	5053	1226aa	MGP_CAROLIEiJ_P0076567	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_CAROLIEiJ_T0076566.1	Ptpro-202	5100	1198aa	MGP_CAROLIEiJ_P0076566	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_CAROLIEiJ_T0076568.1	Ptpro-204	2771	405aa	MGP_CAROLIEiJ_P0076568	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_CAROLIEiJ_T0076569.1	Ptpro-205	2671	377aa	MGP_CAROLIEiJ_P0076569	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_CAROLIEiJ_T0076572.1	Ptpro-208	805	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
MGP_CAROLIEiJ_T0076571.1	Ptpro-207	572	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
MGP_CAROLIEiJ_T0076565.1	Ptpro-201	2160	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_CAROLIEiJ_T0076570.1	Ptpro-206	399	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

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Summary

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