Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Biological process
- GO: Cellular component
- GO: Molecular function
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Vps13d MGP_CAROLIEiJ_G0026780

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Description

vacuolar protein sorting 13 homolog D [Source:NCBI gene;Acc:110292929]

Location

Chromosome 4: 134,809,088-135,032,571 reverse strand.

CAROLI_EIJ_v1.1:LT608246.1

About this gene

This gene has 10 transcripts (splice variants), 192 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
MGP_CAROLIEiJ_T0065696.1	Vps13d-201	15823	4390aa	MGP_CAROLIEiJ_P0065696	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_CAROLIEiJ_T0065697.1	Vps13d-202	15645	4359aa	MGP_CAROLIEiJ_P0065697	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_CAROLIEiJ_T0065699.1	Vps13d-204	10175	3210aa	MGP_CAROLIEiJ_P0065699	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_CAROLIEiJ_T0065698.1	Vps13d-203	6123	1078aa	MGP_CAROLIEiJ_P0065698	Nonsense mediated decay	-
MGP_CAROLIEiJ_T0065700.1	Vps13d-205	802	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
MGP_CAROLIEiJ_T0065702.1	Vps13d-207	689	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
MGP_CAROLIEiJ_T0065703.1	Vps13d-208	4400	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_CAROLIEiJ_T0065701.1	Vps13d-206	3759	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_CAROLIEiJ_T0065705.1	Vps13d-210	2235	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_CAROLIEiJ_T0065704.1	Vps13d-209	358	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

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Summary

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