Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Nfkb1 MGP_CAROLIEiJ_G0025661

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Description

nuclear factor kappa B subunit 1 [Source:NCBI gene;Acc:110291231]

Location

Chromosome 3: 128,844,668-128,953,853 reverse strand.

CAROLI_EIJ_v1.1:LT608232.1

About this gene

This gene has 10 transcripts (splice variants), 200 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
MGP_CAROLIEiJ_T0060658.1	Nfkb1-201	4114	971aa	MGP_CAROLIEiJ_P0060658	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_CAROLIEiJ_T0060662.1	Nfkb1-205	3007	971aa	MGP_CAROLIEiJ_P0060662	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_CAROLIEiJ_T0060659.1	Nfkb1-202	2355	533aa	MGP_CAROLIEiJ_P0060659	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_CAROLIEiJ_T0060663.1	Nfkb1-206	3084	128aa	MGP_CAROLIEiJ_P0060663	Nonsense mediated decay	-
MGP_CAROLIEiJ_T0060660.1	Nfkb1-203	1925	269aa	MGP_CAROLIEiJ_P0060660	Nonsense mediated decay	-
MGP_CAROLIEiJ_T0060664.1	Nfkb1-207	532	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
MGP_CAROLIEiJ_T0060667.1	Nfkb1-210	4149	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_CAROLIEiJ_T0060666.1	Nfkb1-209	3299	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_CAROLIEiJ_T0060661.1	Nfkb1-204	2518	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_CAROLIEiJ_T0060665.1	Nfkb1-208	1996	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

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Summary

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