Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Smn1 MGP_CAROLIEiJ_G0018836

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Description

survival motor neuron protein [Source:NCBI gene;Acc:110307837]

Location

Chromosome 13: 93,743,015-93,755,794 forward strand.

CAROLI_EIJ_v1.1:LT608247.1

About this gene

This gene has 9 transcripts (splice variants), 222 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
MGP_CAROLIEiJ_T0035274.1	Smn1-201	1223	288aa	MGP_CAROLIEiJ_P0035274	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_CAROLIEiJ_T0035278.1	Smn1-205	485	161aa	MGP_CAROLIEiJ_P0035278	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_CAROLIEiJ_T0035277.1	Smn1-204	224	39aa	MGP_CAROLIEiJ_P0035277	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_CAROLIEiJ_T0035276.1	Smn1-203	421	46aa	MGP_CAROLIEiJ_P0035276	Nonsense mediated decay	-
MGP_CAROLIEiJ_T0035281.1	Smn1-208	641	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_CAROLIEiJ_T0035279.1	Smn1-206	605	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_CAROLIEiJ_T0035280.1	Smn1-207	547	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_CAROLIEiJ_T0035275.1	Smn1-202	465	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_CAROLIEiJ_T0035282.1	Smn1-209	416	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

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Summary

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