Transcript: ENST00000703603.1 H2AC1-202

Description

H2A clustered histone 1 [Source:HGNC Symbol;Acc:HGNC:18729]

Gene Synonyms

BA317E16.2, H2AFR, HIST1H2AA

Location

Chromosome 6: 25,723,397-25,726,560 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 1 domain and feature, is associated with 1828 variant alleles and maps to 144 oligo probes.

Gene

This transcript is a product of gene ENSG00000164508.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000297012.5	H2AC1-201	500	131aa	ENSP00000297012.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4562	Q96QV6	NM_170745.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000703603.1	H2AC1-202	1043	131aa	ENSP00000515391.1	Nonsense mediated decay	CCDS4562	Q96QV6	-	-

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 1,043 bps, Translation length: 131 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96QV6

CCDS

This transcript is a member of the Human CCDS set: CCDS4562

Version

ENST00000703603.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

Transcript: ENST00000703603.1 H2AC1-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000703603.1 H2AC1-202

Summary

About Us

Get help

Our sister sites

Follow us