Transcript: ENST00000684028.1 LCE3C-202

Description

late cornified envelope 3C [Source:HGNC Symbol;Acc:HGNC:16612]

Gene Synonyms

LEP15, SPRL3A

Location

Chromosome 1: 152,600,234-152,601,086 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 8 domains and features, is associated with 280 variant alleles and maps to 116 oligo probes.

Gene

This transcript is a product of gene ENSG00000244057.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000684028.1	LCE3C-202	431	94aa	ENSP00000507204.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1015	Q5T5A8	NM_178434.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000333881.3	LCE3C-201	425	94aa	ENSP00000334644.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1015	Q5T5A8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 431 bps, Translation length: 94 residues

MANE

This MANE Select transcript contains ENSP00000507204 and matches to NM_178434.3 and NP_848521.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5T5A8

CCDS

This transcript is a member of the Human CCDS set: CCDS1015

Version

ENST00000684028.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000684028.1 LCE3C-202

Summary

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Transcript: ENST00000684028.1 LCE3C-202

Summary

About Us

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