Transcript: ENST00000674056.1 POU3F3-202

Description

POU class 3 homeobox 3 [Source:HGNC Symbol;Acc:HGNC:9216]

Gene Synonyms

BRN1, OTF8

Location

Chromosome 2: 104,853,287-104,858,574 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 36 domains and features, is associated with 3554 variant alleles and maps to 578 oligo probes.

Gene

This transcript is a product of gene ENSG00000198914.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000361360.4	POU3F3-201	4460	500aa	ENSP00000355001.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33265	P20264	NM_006236.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000674056.1	POU3F3-202	4401	500aa	ENSP00000501036.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33265	P20264	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 4, Coding exons: 1, Transcript length: 4,401 bps, Translation length: 500 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P20264

CCDS

This transcript is a member of the Human CCDS set: CCDS33265

Version

ENST00000674056.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

inferred exon combination [Definitions]

RNA-Seq supported only

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000674056.1 POU3F3-202

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Transcript: ENST00000674056.1 POU3F3-202

Summary

About Us

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