Transcript: ENST00000652295.2 CAMP-202

Description

cathelicidin antimicrobial peptide [Source:HGNC Symbol;Acc:HGNC:1472]

Gene Synonyms

CAP18, FALL-39, FALL39, LL37

Location

Chromosome 3: 48,223,495-48,225,485 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 37 domains and features, is associated with 983 variant alleles and maps to 258 oligo probes.

Gene

This transcript is a product of gene ENSG00000164047.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000652295.2	CAMP-202	591	170aa	ENSP00000498425.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2762	A0A384NPR0 P49913	NM_004345.5	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENST00000296435.2	CAMP-201	745	173aa	ENSP00000296435.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KNB4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 591 bps, Translation length: 170 residues

MANE

This MANE Select transcript contains ENSP00000498425 and matches to NM_004345.5 and NP_004336.4

Uniprot

This transcript corresponds to the following Uniprot identifiers: P49913

CCDS

This transcript is a member of the Human CCDS set: CCDS2762

Version

ENST00000652295.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

upstream ATG [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000652295.2 CAMP-202

Summary

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Transcript: ENST00000652295.2 CAMP-202

Summary

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