Transcript: ENST00000649031.1 HOXA13-202

Description

homeobox A13 [Source:HGNC Symbol;Acc:HGNC:5102]

Gene Synonyms

HOX1, HOX1J

Location

Chromosome 7: 27,194,364-27,200,091 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 14 domains and features, is associated with 3488 variant alleles and maps to 742 oligo probes.

Gene

This transcript is a product of gene ENSG00000106031.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000649031.1	HOXA13-202	5015	388aa	ENSP00000497112.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5412	P31271	NM_000522.5	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000518136.3	HOXA13-201	871	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 5,015 bps, Translation length: 388 residues

MANE

This MANE Select transcript contains ENSP00000497112 and matches to NM_000522.5 and NP_000513.2

Uniprot

This transcript corresponds to the following Uniprot identifiers: P31271

CCDS

This transcript is a member of the Human CCDS set: CCDS5412

Version

ENST00000649031.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

3' standard supported extension [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000649031.1 HOXA13-202

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Transcript: ENST00000649031.1 HOXA13-202

Summary

About Us

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