Transcript: ENST00000643606.3 TMIE-201

Description

transmembrane inner ear [Source:HGNC Symbol;Acc:HGNC:30800]

Gene Synonyms

DFNB6

Location

Chromosome 3: 46,701,392-46,710,886 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 11 domains and features, is associated with 4305 variant alleles and maps to 316 oligo probes.

Gene

This transcript is a product of gene ENSG00000181585.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000643606.3	TMIE-201	1765	156aa	ENSP00000494576.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43081	Q8NEW7	NM_147196.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000644830.1	TMIE-202	1634	103aa	ENSP00000495111.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS93259	A0A2R8YDZ8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000651652.1	TMIE-203	1038	92aa	ENSP00000498953.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494C1A3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,765 bps, Translation length: 156 residues

MANE

This MANE Select transcript contains ENSP00000494576 and matches to NM_147196.3 and NP_671729.2

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8NEW7

CCDS

This transcript is a member of the Human CCDS set: CCDS43081

Version

ENST00000643606.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000643606.3 TMIE-201

Summary

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Transcript: ENST00000643606.3 TMIE-201

Summary

About Us

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