Transcript: ENST00000641732.2 OR1A1-202

Description

olfactory receptor family 1 subfamily A member 1 [Source:HGNC Symbol;Acc:HGNC:8179]

Gene Synonyms

OR17-7

Location

Chromosome 17: 3,207,667-3,218,896 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 25 domains and features, is associated with 5168 variant alleles and maps to 166 oligo probes.

Gene

This transcript is a product of gene ENSG00000172146.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000641732.2	OR1A1-202	4166	309aa	ENSP00000493179.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11022	A0A126GWA2 Q9P1Q5	NM_014565.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000641322.1	OR1A1-201	3743	309aa	ENSP00000492897.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11022	A0A126GWA2 Q9P1Q5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000642014.1	OR1A1-203	3608	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 1, Transcript length: 4,166 bps, Translation length: 309 residues

MANE

This MANE Select transcript contains ENSP00000493179 and matches to NM_014565.3 and NP_055380.2

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9P1Q5

CCDS

This transcript is a member of the Human CCDS set: CCDS11022

Version

ENST00000641732.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000641732.2 OR1A1-202

Summary

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Transcript: ENST00000641732.2 OR1A1-202

Summary

About Us

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