Transcript: ENST00000622824.1 B3GNT6-202

Description

UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 [Source:HGNC Symbol;Acc:HGNC:24141]

Gene Synonyms

B3GN-T6

Location

Chromosome 11: 77,034,398-77,041,973 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 10 domains and features, is associated with 4429 variant alleles and maps to 432 oligo probes.

Gene

This transcript is a product of gene ENSG00000198488.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000622824.1	B3GNT6-202	2503	384aa	ENSP00000484640.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53681	Q6ZMB0-1	NM_138706.5	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000528622.5	B3GNT6-201	568	121aa	ENSP00000435628.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PJ79	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 2,503 bps, Translation length: 384 residues

MANE

This MANE Select transcript contains ENSP00000484640 and matches to NM_138706.5 and NP_619651.3

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6ZMB0

CCDS

This transcript is a member of the Human CCDS set: CCDS53681

Transcript Support Level (TSL)

TSL:1

Version

ENST00000622824.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000622824.1 B3GNT6-202

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Transcript: ENST00000622824.1 B3GNT6-202

Summary

About Us

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