Transcript: ENST00000620438.2 H2BC26-201

Description

H2B clustered histone 26 [Source:HGNC Symbol;Acc:HGNC:20514]

Gene Synonyms

H2BU1, HIST3H2BB

Location

Chromosome 1: 228,458,103-228,463,104 forward strand.

About this transcript

This transcript has 1 exon, is annotated with 17 domains and features, is associated with 2738 variant alleles and maps to 279 oligo probes.

Gene

This transcript is a product of gene ENSG00000196890.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000693095.1	H2BC26-203	456	126aa	ENSP00000509901.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1574	Q8N257	NM_175055.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000620438.2	H2BC26-201	5002	126aa	ENSP00000479284.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1574	Q8N257	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000690378.1	H2BC26-202	2074	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	-

Summary

Statistics

Exons: 1, Coding exons: 1, Transcript length: 5,002 bps, Translation length: 126 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8N257

CCDS

This transcript is a member of the Human CCDS set: CCDS1574

Transcript Support Level (TSL)

TSL:NA

Version

ENST00000620438.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000620438.2 H2BC26-201

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Transcript: ENST00000620438.2 H2BC26-201

Summary

About Us

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