Transcript: ENST00000570508.3 APOBEC3A-205

Description

apolipoprotein B mRNA editing enzyme catalytic subunit 3A [Source:HGNC Symbol;Acc:HGNC:17343]

Gene Synonyms

ARP3, PHRBN

Location

Scaffold HSCHR22_1_CTG2: 73,317-78,547 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 20 domains and features and maps to 344 oligo probes.

Gene

This transcript is a product of gene ENSG00000262156.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq Match	Flags
ENST00000570508.3	APOBEC3A-205	1017	199aa	ENSP00000461288.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P31941-1	NM_001193289.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000623492.3	APOBEC3A-206	1135	199aa	ENSP00000485234.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P31941-1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000624713.1	APOBEC3A-207	566	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,017 bps, Translation length: 199 residues

MANE

This MANE Select transcript contains ENSP00000461288 and matches to NM_001193289.2 and NP_001180218.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: P31941

Transcript Support Level (TSL)

TSL:1

Version

ENST00000570508.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000570508.3 APOBEC3A-205

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Transcript: ENST00000570508.3 APOBEC3A-205

Summary

About Us

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