Transcript: ENST00000559089.6 UBAP1L-202

Description

ubiquitin associated protein 1 like [Source:HGNC Symbol;Acc:HGNC:40028]

Location

Chromosome 15: 65,092,760-65,115,200 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 10 domains and features, is associated with 9458 variant alleles and maps to 239 oligo probes.

Gene

This transcript is a product of gene ENSG00000246922.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000559089.6	UBAP1L-202	1707	381aa	ENSP00000454012.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53948	F5GYI3	NM_001163692.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000558802.1	UBAP1L-201	640	117aa	ENSP00000452794.1	Nonsense mediated decay		H0YKG2	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000561387.1	UBAP1L-203	7377	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 1,707 bps, Translation length: 381 residues

MANE

This MANE Select transcript contains ENSP00000454012 and matches to NM_001163692.2 and NP_001157164.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: F5GYI3

CCDS

This transcript is a member of the Human CCDS set: CCDS53948

Transcript Support Level (TSL)

TSL:1

Version

ENST00000559089.6

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000559089.6 UBAP1L-202

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Transcript: ENST00000559089.6 UBAP1L-202

Summary

About Us

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