Transcript: ENST00000547378.1

Description

novel protein

Location

Chromosome 14: 31,400,279-31,457,407 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 3 domains and features, is associated with 23901 variant alleles and maps to 88 oligo probes.

Gene

This transcript is a product of gene ENSG00000203546.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq Match	Flags
ENST00000547378.1	-	474	67aa	ENSP00000447056.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W1H4	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000549185.5	-	3860	67aa	ENSP00000446654.1	Nonsense mediated decay	F8W1H4	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000547760.1	-	749	63aa	ENSP00000449799.1	Nonsense mediated decay	H0YIP1	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 474 bps, Translation length: 67 residues

Transcript Support Level (TSL)

TSL:3

Version

ENST00000547378.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000547378.1

Summary

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Transcript: ENST00000547378.1

Summary

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