Transcript: ENST00000542475.3 C17orf100-201

Description

chromosome 17 open reading frame 100 [Source:HGNC Symbol;Acc:HGNC:34494]

Gene Synonyms

LOC388327

Location

Chromosome 17: 6,651,762-6,653,476 forward strand.

About this transcript

This transcript has 1 exon, is annotated with 7 domains and features, is associated with 838 variant alleles and maps to 234 oligo probes.

Gene

This transcript is a product of gene ENSG00000256806.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000542475.3	C17orf100-201	1715	118aa	ENSP00000491070.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS73952	A8MU93	NM_001105520.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000635042.1	C17orf100-203	1062	118aa	ENSP00000491523.1	Nonsense mediated decay	CCDS73952	A8MU93	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000634977.1	C17orf100-202	811	35aa	ENSP00000491769.1	Nonsense mediated decay		A0A1W2PPW6	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 1, Coding exons: 1, Transcript length: 1,715 bps, Translation length: 118 residues

MANE

This MANE Select transcript contains ENSP00000491070 and matches to NM_001105520.2 and NP_001098990.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: A8MU93

CCDS

This transcript is a member of the Human CCDS set: CCDS73952

Transcript Support Level (TSL)

TSL:NA

Version

ENST00000542475.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000542475.3 C17orf100-201

Summary

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Transcript: ENST00000542475.3 C17orf100-201

Summary

About Us

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