Transcript: ENST00000535419.2 PGRMC1-202

Description

progesterone receptor membrane component 1 [Source:HGNC Symbol;Acc:HGNC:16090]

Gene Synonyms

HPR6.6

Location

Chromosome X: 119,236,245-119,244,465 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 9 domains and features, is associated with 2386 variant alleles and maps to 286 oligo probes.

Gene

This transcript is a product of gene ENSG00000101856.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000217971.8	PGRMC1-201	1879	195aa	ENSP00000217971.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14576	O00264-1	NM_006667.5	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000535419.2	PGRMC1-202	1762	143aa	ENSP00000442821.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS65313	O00264-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 1,762 bps, Translation length: 143 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O00264

CCDS

This transcript is a member of the Human CCDS set: CCDS65313

Transcript Support Level (TSL)

TSL:2

Version

ENST00000535419.2

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000535419.2 PGRMC1-202

Summary

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Transcript: ENST00000535419.2 PGRMC1-202

Summary

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