Transcript: ENST00000512175.3 SPMAP2L-202

Description

sperm microtubule associated protein 2 like [Source:HGNC Symbol;Acc:HGNC:43771]

Gene Synonyms

THEGL

Location

Chromosome 4: 56,530,606-56,603,507 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 17 domains and features, is associated with 30579 variant alleles and maps to 412 oligo probes.

Gene

This transcript is a product of gene ENSG00000249693.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000512175.3	SPMAP2L-202	1653	465aa	ENSP00000456850.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58899	P0DJG4	NM_001256475.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000510716.1	SPMAP2L-201	571	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,653 bps, Translation length: 465 residues

MANE

This MANE Select transcript contains ENSP00000456850 and matches to NM_001256475.2 and NP_001243404.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: P0DJG4

CCDS

This transcript is a member of the Human CCDS set: CCDS58899

Transcript Support Level (TSL)

TSL:5

Version

ENST00000512175.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

not organism-supported [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000512175.3 SPMAP2L-202

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Transcript: ENST00000512175.3 SPMAP2L-202

Summary

About Us

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