Transcript: ENST00000488170.5 B3GALNT1-212

Description

beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) [Source:HGNC Symbol;Acc:HGNC:918]

Gene Synonyms

B3GALANT1, B3GALT3, BETA3GAL-T3, GALT3, GLOB

Location

Chromosome 3: 161,085,759-161,105,140 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 6 domains and features, is associated with 8344 variant alleles and maps to 615 oligo probes.

Gene

This transcript is a product of gene ENSG00000169255.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000320474.10	B3GALNT1-201	3295	331aa	ENSP00000323479.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3193	O75752	NM_003781.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000652730.1	B3GALNT1-251	4218	331aa	ENSP00000498660.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3193	O75752	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000651460.1	B3GALNT1-232	3890	331aa	ENSP00000498369.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3193	O75752	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000652111.1	B3GALNT1-243	3860	331aa	ENSP00000498689.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3193	O75752	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000651305.1	B3GALNT1-227	3774	331aa	ENSP00000498427.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3193	O75752	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000392781.7	B3GALNT1-203	3620	331aa	ENSP00000376532.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3193	O75752	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000651292.1	B3GALNT1-226	3604	331aa	ENSP00000498542.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3193	O75752	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000651254.1	B3GALNT1-224	3575	331aa	ENSP00000498553.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3193	O75752	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000651689.1	B3GALNT1-235	3538	331aa	ENSP00000499010.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3193	O75752	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000651791.1	B3GALNT1-236	3531	331aa	ENSP00000499180.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3193	O75752	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000651972.1	B3GALNT1-240	3512	331aa	ENSP00000498907.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3193	O75752	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000651379.1	B3GALNT1-228	3481	331aa	ENSP00000498978.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3193	O75752	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000650695.1	B3GALNT1-219	3479	331aa	ENSP00000498902.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3193	O75752	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000651953.1	B3GALNT1-239	3433	331aa	ENSP00000498633.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3193	O75752	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000651380.1	B3GALNT1-229	3400	331aa	ENSP00000499072.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3193	O75752	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000651117.1	B3GALNT1-221	3398	331aa	ENSP00000498854.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3193	O75752	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000651178.1	B3GALNT1-223	3392	331aa	ENSP00000498982.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3193	O75752	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000651916.1	B3GALNT1-238	3380	331aa	ENSP00000498487.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3193	O75752	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000652059.1	B3GALNT1-242	3333	331aa	ENSP00000498743.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3193	O75752	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000650733.1	B3GALNT1-220	3325	331aa	ENSP00000499186.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3193	O75752	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000652143.1	B3GALNT1-245	3263	331aa	ENSP00000498655.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3193	O75752	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000651686.1	B3GALNT1-234	3256	331aa	ENSP00000498346.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3193	O75752	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000392779.6	B3GALNT1-202	3221	331aa	ENSP00000376530.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3193	O75752	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000652377.1	B3GALNT1-247	3058	331aa	ENSP00000498481.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3193	O75752	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000651430.1	B3GALNT1-231	2736	91aa	ENSP00000499079.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JXR0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000651282.1	B3GALNT1-225	2694	201aa	ENSP00000498435.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494C097	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000651801.1	B3GALNT1-237	2538	91aa	ENSP00000498243.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JXR0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000652669.1	B3GALNT1-250	2505	331aa	ENSP00000498696.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3193	O75752	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000651509.1	B3GALNT1-233	2503	331aa	ENSP00000499003.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3193	O75752	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000652596.1	B3GALNT1-249	2458	331aa	ENSP00000498810.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3193	O75752	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000652593.1	B3GALNT1-248	2398	33aa	ENSP00000498331.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EVF0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000651147.1	B3GALNT1-222	2224	331aa	ENSP00000498478.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3193	O75752	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000473285.5	B3GALNT1-208	2123	331aa	ENSP00000418226.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3193	O75752	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000417187.2	B3GALNT1-204	1929	33aa	ENSP00000407027.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EVF0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000488170.5	B3GALNT1-212	1660	331aa	ENSP00000420163.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3193	O75752	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000652032.1	B3GALNT1-241	1640	331aa	ENSP00000498901.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3193	O75752	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000494818.6	B3GALNT1-215	1138	33aa	ENSP00000498378.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EVF0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000652309.1	B3GALNT1-246	1116	251aa	ENSP00000498765.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494C0Y5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000494173.7	B3GALNT1-214	1013	91aa	ENSP00000419127.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JXR0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000468268.5	B3GALNT1-206	914	111aa	ENSP00000419476.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EVS2	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000476999.6	B3GALNT1-209	818	33aa	ENSP00000498840.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EVF0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000492353.5	B3GALNT1-213	662	65aa	ENSP00000418567.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J0F8	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000460353.2	B3GALNT1-205	584	30aa	ENSP00000417053.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J6I7	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000473142.5	B3GALNT1-207	572	58aa	ENSP00000420604.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JD16	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000484127.5	B3GALNT1-211	552	41aa	ENSP00000420059.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JRV6	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000498216.5	B3GALNT1-218	541	54aa	ENSP00000417643.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J8U7	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000496295.6	B3GALNT1-216	829	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000478383.5	B3GALNT1-210	572	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000497487.1	B3GALNT1-217	486	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000651422.1	B3GALNT1-230	3786	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000652134.1	B3GALNT1-244	3083	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 1, Transcript length: 1,660 bps, Translation length: 331 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O75752

CCDS

This transcript is a member of the Human CCDS set: CCDS3193

Transcript Support Level (TSL)

TSL:1

Version

ENST00000488170.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000488170.5 B3GALNT1-212

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Transcript: ENST00000488170.5 B3GALNT1-212

Summary

About Us

Get help

Our sister sites

Follow us