Transcript: ENST00000470488.2 PARD6G-203

Description

par-6 family cell polarity regulator gamma [Source:HGNC Symbol;Acc:HGNC:16076]

Gene Synonyms

PAR-6G, PAR6GAMMA

Location

Chromosome 18: 80,182,850-80,247,348 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 8 domains and features, is associated with 28790 variant alleles and maps to 139 oligo probes.

Gene

This transcript is a product of gene ENSG00000178184.16 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000353265.8	PARD6G-201	3836	376aa	ENSP00000343144.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12022	Q9BYG4-1	NM_032510.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000470488.2	PARD6G-203	596	107aa	ENSP00000468735.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9BYG4-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000463384.1	PARD6G-202	522	61aa	ENSP00000466076.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ELH1	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 596 bps, Translation length: 107 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9BYG4

Transcript Support Level (TSL)

TSL:1

Version

ENST00000470488.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000470488.2 PARD6G-203

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Transcript: ENST00000470488.2 PARD6G-203

Summary

About Us

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