Transcript: ENST00000439969.2 LINC03040-202

Description

long intergenic non-protein coding RNA 3040 [Source:HGNC Symbol;Acc:HGNC:28692]

Gene Synonyms

C6ORF223, MGC45491

Location

Chromosome 6: 44,000,617-44,005,108 forward strand.

About this transcript

This transcript has 4 exons, is associated with 2517 variant alleles and maps to 389 oligo probes.

Gene

This transcript is a product of gene ENSG00000181577.16 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000336600.6	LINC03040-201	5250	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000442114.6	LINC03040-203	3109	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000439969.2	LINC03040-202	2757	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000448947.2	LINC03040-204	869	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 2,757 bps,

Transcript Support Level (TSL)

TSL:2

Version

ENST00000439969.2

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000439969.2 LINC03040-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000439969.2 LINC03040-202

Summary

About Us

Get help

Our sister sites

Follow us