Transcript: ENST00000432071.1 VAMP8-203

Description

vesicle associated membrane protein 8 [Source:HGNC Symbol;Acc:HGNC:12647]

Gene Synonyms

EDB, VAMP-8

Location

Chromosome 2: 85,561,562-85,581,997 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 12 domains and features, is associated with 9018 variant alleles and maps to 264 oligo probes.

Gene

This transcript is a product of gene ENSG00000118640.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000263864.10	VAMP8-201	679	100aa	ENSP00000263864.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1979	Q9BV40	NM_003761.5	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000409760.1	VAMP8-202	805	99aa	ENSP00000387094.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B8ZZT4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000432071.1	VAMP8-203	664	74aa	ENSP00000407984.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JXZ5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 664 bps, Translation length: 74 residues

Transcript Support Level (TSL)

TSL:3

Version

ENST00000432071.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000432071.1 VAMP8-203

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Transcript: ENST00000432071.1 VAMP8-203

Summary

About Us

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