Transcript: ENST00000406189.4 MEX3C-201

Description

mex-3 RNA binding family member C [Source:HGNC Symbol;Acc:HGNC:28040]

Gene Synonyms

FLJ38871, RKHD2, RNF194

Location

Chromosome 18: 51,174,550-51,197,681 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 47 domains and features, is associated with 10127 variant alleles and maps to 327 oligo probes.

Gene

This transcript is a product of gene ENSG00000176624.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000406189.4	MEX3C-201	4142	659aa	ENSP00000385610.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11951	Q5U5Q3	NM_016626.5	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000592416.1	MEX3C-203	3850	115aa	ENSP00000468078.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ER23	-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000591040.2	MEX3C-202	828	216aa	ENSP00000502049.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A6Q8PG18	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 4,142 bps, Translation length: 659 residues

MANE

This MANE Select transcript contains ENSP00000385610 and matches to NM_016626.5 and NP_057710.3

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5U5Q3

CCDS

This transcript is a member of the Human CCDS set: CCDS11951

Transcript Support Level (TSL)

TSL:1

Version

ENST00000406189.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000406189.4 MEX3C-201

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Transcript: ENST00000406189.4 MEX3C-201

Summary

About Us

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