Transcript: ENST00000401642.8 SCFD2-202

Description

sec1 family domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30676]

Gene Synonyms

FLJ39514, STXBP1L1

Location

Chromosome 4: 52,872,982-53,366,061 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 8 domains and features, is associated with 215224 variant alleles and maps to 489 oligo probes.

Gene

This transcript is a product of gene ENSG00000184178.17 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000401642.8	SCFD2-202	3162	684aa	ENSP00000384182.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33984	Q8WU76-1	NM_152540.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000388940.8	SCFD2-201	2221	639aa	ENSP00000373592.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8WU76-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000503450.1	SCFD2-203	529	28aa	ENSP00000427202.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RCK6	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 3,162 bps, Translation length: 684 residues

MANE

This MANE Select transcript contains ENSP00000384182 and matches to NM_152540.4 and NP_689753.2

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8WU76

CCDS

This transcript is a member of the Human CCDS set: CCDS33984

Transcript Support Level (TSL)

TSL:1

Version

ENST00000401642.8

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000401642.8 SCFD2-202

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Transcript: ENST00000401642.8 SCFD2-202

Summary

About Us

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