Transcript: ENST00000401542.3 LRRC72-202

Description

leucine rich repeat containing 72 [Source:HGNC Symbol;Acc:HGNC:42972]

Gene Synonyms

CFAP279, FAP279

Location

Chromosome 7: 16,526,825-16,581,568 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 9 domains and features, is associated with 24675 variant alleles and maps to 302 oligo probes.

Gene

This transcript is a product of gene ENSG00000205858.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000401542.3	LRRC72-202	1071	287aa	ENSP00000384971.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56464	A6NJI9	NM_001195280.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000382124.7	LRRC72-201	454	57aa	ENSP00000371558.3	Nonsense mediated decay		F8VSY1	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000482711.1	LRRC72-203	446	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,071 bps, Translation length: 287 residues

MANE

This MANE Select transcript contains ENSP00000384971 and matches to NM_001195280.2 and NP_001182209.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: A6NJI9

CCDS

This transcript is a member of the Human CCDS set: CCDS56464

Transcript Support Level (TSL)

TSL:5

Version

ENST00000401542.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

not organism-supported [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000401542.3 LRRC72-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000401542.3 LRRC72-202

Summary

About Us

Get help

Our sister sites

Follow us