Transcript: ENST00000381482.8 STK35-201

Description

serine/threonine kinase 35 [Source:HGNC Symbol;Acc:HGNC:16254]

Gene Synonyms

BA550O8.2, CLIK1

Location

Chromosome 20: 2,101,827-2,148,555 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 18 domains and features, is associated with 20614 variant alleles and maps to 381 oligo probes.

Gene

This transcript is a product of gene ENSG00000125834.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000381482.8	STK35-201	6469	534aa	ENSP00000370891.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13024	Q8TDR2	NM_080836.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000493263.1	STK35-202	1595	395aa	ENSP00000426612.1	Nonsense mediated decay		A0A0C4DGC9	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 6,469 bps, Translation length: 534 residues

MANE

This MANE Select transcript contains ENSP00000370891 and matches to NM_080836.4 and NP_543026.2

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8TDR2

CCDS

This transcript is a member of the Human CCDS set: CCDS13024

Transcript Support Level (TSL)

TSL:5

Version

ENST00000381482.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000381482.8 STK35-201

Summary

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Transcript: ENST00000381482.8 STK35-201

Summary

About Us

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