Transcript: ENST00000372071.7 OPN4-202

Description

opsin 4 [Source:HGNC Symbol;Acc:HGNC:14449]

Gene Synonyms

MELANOPSIN, MOP

Location

Chromosome 10: 86,654,518-86,666,455 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 34 domains and features, is associated with 6168 variant alleles and maps to 519 oligo probes.

Gene

This transcript is a product of gene ENSG00000122375.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000241891.10	OPN4-201	2383	478aa	ENSP00000241891.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7376	Q9UHM6-1	NM_033282.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000372071.7	OPN4-202	2440	489aa	ENSP00000361141.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31237	Q9UHM6-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000690949.1	OPN4-204	2143	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	-
ENST00000686083.1	OPN4-203	2505	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 2,440 bps, Translation length: 489 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UHM6

CCDS

This transcript is a member of the Human CCDS set: CCDS31237

Transcript Support Level (TSL)

TSL:1

Version

ENST00000372071.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

RNA-Seq supported partial [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000372071.7 OPN4-202

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Transcript: ENST00000372071.7 OPN4-202

Summary

About Us

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