Transcript: ENST00000368427.3 LENEP-201

Description

lens epithelial protein [Source:HGNC Symbol;Acc:HGNC:14429]

Gene Synonyms

LEP503

Location

Chromosome 1: 154,993,586-154,994,315 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 1 domain and feature, is associated with 352 variant alleles and maps to 201 oligo probes.

Gene

This transcript is a product of gene ENSG00000163352.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000392487.2	LENEP-202	730	61aa	ENSP00000376278.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1080	Q9Y5L5	NM_001394530.1	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000368427.3	LENEP-201	649	61aa	ENSP00000357412.3	Nonsense mediated decay	CCDS1080	Q9Y5L5	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 649 bps, Translation length: 61 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y5L5

CCDS

This transcript is a member of the Human CCDS set: CCDS1080

Transcript Support Level (TSL)

TSL:1

Version

ENST00000368427.3

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENST00000368427.3 LENEP-201

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Transcript: ENST00000368427.3 LENEP-201

Summary

About Us

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