Transcript: ENST00000368328.5 CENPW-203

Description

centromere protein W [Source:HGNC Symbol;Acc:HGNC:21488]

Gene Synonyms

C6ORF173, CUG2

Location

Chromosome 6: 126,340,115-126,348,875 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 10 domains and features, is associated with 3327 variant alleles and maps to 247 oligo probes.

Gene

This transcript is a product of gene ENSG00000203760.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000368328.5	CENPW-203	809	88aa	ENSP00000357311.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34529	Q5EE01-1	NM_001012507.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000368325.5	CENPW-201	528	103aa	ENSP00000357308.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS69196	Q5EE01-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000368326.5	CENPW-202	443	67aa	ENSP00000357309.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS75516	A0A0A0MRK5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 809 bps, Translation length: 88 residues

MANE

This MANE Select transcript contains ENSP00000357311 and matches to NM_001012507.4 and NP_001012525.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5EE01

CCDS

This transcript is a member of the Human CCDS set: CCDS34529

Transcript Support Level (TSL)

TSL:1

Version

ENST00000368328.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000368328.5 CENPW-203

Summary

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Transcript: ENST00000368328.5 CENPW-203

Summary

About Us

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