Transcript: ENST00000329446.5 C10orf120-201

Description

chromosome 10 open reading frame 120 [Source:HGNC Symbol;Acc:HGNC:25707]

Gene Synonyms

BA318C4.1

Location

Chromosome 10: 122,697,709-122,699,846 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 5 domains and features, is associated with 1413 variant alleles and maps to 197 oligo probes.

Gene

This transcript is a product of gene ENSG00000183559.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000329446.5	C10orf120-201	1088	335aa	ENSP00000331012.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31302	Q5SQS8	NM_001010912.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000432000.5	C10orf120-202	628	159aa	ENSP00000410278.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y758	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 1,088 bps, Translation length: 335 residues

MANE

This MANE Select transcript contains ENSP00000331012 and matches to NM_001010912.4 and NP_001010912.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5SQS8

CCDS

This transcript is a member of the Human CCDS set: CCDS31302

Transcript Support Level (TSL)

TSL:1

Version

ENST00000329446.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000329446.5 C10orf120-201

Summary

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Transcript: ENST00000329446.5 C10orf120-201

Summary

About Us

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