Transcript: ENST00000324941.5 VPS37D-201

Description

VPS37D subunit of ESCRT-I [Source:HGNC Symbol;Acc:HGNC:18287]

Gene Synonyms

MGC35352, WBSCR24

Location

Chromosome 7: 73,667,831-73,672,110 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 10 domains and features, is associated with 2448 variant alleles and maps to 267 oligo probes.

Gene

This transcript is a product of gene ENSG00000176428.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000324941.5	VPS37D-201	1618	251aa	ENSP00000320416.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43596	Q86XT2	NM_001077621.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000451519.1	VPS37D-202	1303	166aa	ENSP00000413337.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JYT9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,618 bps, Translation length: 251 residues

MANE

This MANE Select transcript contains ENSP00000320416 and matches to NM_001077621.2 and NP_001071089.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q86XT2

CCDS

This transcript is a member of the Human CCDS set: CCDS43596

Transcript Support Level (TSL)

TSL:1

Version

ENST00000324941.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000324941.5 VPS37D-201

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Transcript: ENST00000324941.5 VPS37D-201

Summary

About Us

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