Human (GRCh38.p14)
Description

protein tyrosine phosphatase non-receptor type 6 [Source:HGNC Symbol;Acc:HGNC:9658]

Gene Synonyms

HCP, HCPH, PTP-1C, SHP-1, SHP1

Location
About this transcript

This transcript has 16 exons, is annotated with 52 domains and features, is associated with 5128 variant alleles and maps to 491 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000318974.14PTPN6-2012161595aaENSP00000326010.9
 
Protein coding
CCDS44820P29350-1 NM_002831.6MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000456013.5PTPN6-2042389624aaENSP00000391592.1
 
Protein coding
CCDS44821P29350-4 -GENCODE basicTSL:1
ENST00000399448.5PTPN6-2022159597aaENSP00000382376.1
 
Protein coding
CCDS41744P29350-3 -GENCODE basicTSL:1
ENST00000543115.5PTPN6-220650130aaENSP00000443393.1
 
Protein coding
F5H5H9 -TSL:4CDS 3' incomplete
ENST00000541698.5PTPN6-215592150aaENSP00000445646.1
 
Protein coding
F5H1Z8 -TSL:4CDS 3' incomplete
ENST00000538715.5PTPN6-211579165aaENSP00000438740.1
 
Protein coding
F5H0N8 -TSL:4CDS 3' incomplete
ENST00000542462.1PTPN6-217570144aaENSP00000440114.1
 
Protein coding
F5GY79 -TSL:4CDS 3' incomplete
ENST00000545153.5PTPN6-22395972aaENSP00000476175.1
 
Nonsense mediated decay
U3KQS1 -TSL:3
ENST00000542848.5PTPN6-21965658aaENSP00000444805.1
 
Nonsense mediated decay
F5H4Z1 -TSL:5
ENST00000536013.5PTPN6-20760256aaENSP00000446345.1
 
Nonsense mediated decay
F5H1V7 -TSL:5
ENST00000535462.5PTPN6-20654360aaENSP00000441044.1
 
Nonsense mediated decay
F5GXD4 -TSL:4
ENST00000539029.5PTPN6-212705No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000537533.1PTPN6-209673No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000542277.5PTPN6-216664No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000540740.5PTPN6-214592No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000543120.5PTPN6-221564No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000534900.5PTPN6-205538No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000416215.6PTPN6-2032412No protein-
 
Retained intron
--TSL:2
ENST00000543744.1PTPN6-2222043No protein-
 
Retained intron
--TSL:1
ENST00000539365.1PTPN6-213907No protein-
 
Retained intron
--TSL:5
ENST00000542761.5PTPN6-218795No protein-
 
Retained intron
--TSL:2
ENST00000538318.5PTPN6-210759No protein-
 
Retained intron
--TSL:5
ENST00000536521.5PTPN6-208513No protein-
 
Retained intron
--TSL:2
Statistics

Exons: 16, Coding exons: 15, Transcript length: 2,161 bps, Translation length: 595 residues

MANE

This MANE Select transcript contains ENSP00000326010 and matches to NM_002831.6 and NP_002822.2

Uniprot

This transcript corresponds to the following Uniprot identifiers: P29350

CCDS

This transcript is a member of the Human CCDS set: CCDS44820

Transcript Support Level (TSL)

TSL:1

Version

ENST00000318974.14

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.