Transcript: ENST00000306077.5 TMEM43-201

Description

transmembrane protein 43 [Source:HGNC Symbol;Acc:HGNC:28472]

Gene Synonyms

ARVD5, DKFZP586G1919, LUMA, MGC3222

Location

Chromosome 3: 14,125,052-14,143,680 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 7 domains and features, is associated with 9091 variant alleles and maps to 599 oligo probes.

Gene

This transcript is a product of gene ENSG00000170876.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000306077.5	TMEM43-201	3230	400aa	ENSP00000303992.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2618	A0A024R2F9 Q9BTV4	NM_024334.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000432444.2	TMEM43-202	3484	66aa	ENSP00000395617.1	Nonsense mediated decay		F8WDL3	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 3,230 bps, Translation length: 400 residues

MANE

This MANE Select transcript contains ENSP00000303992 and matches to NM_024334.3 and NP_077310.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9BTV4

CCDS

This transcript is a member of the Human CCDS set: CCDS2618

Transcript Support Level (TSL)

TSL:1

Version

ENST00000306077.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000306077.5 TMEM43-201

Summary

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Transcript: ENST00000306077.5 TMEM43-201

Summary

About Us

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