Transcript: ENSSSCT00000092123.1 CAPN12-202

Description

calpain 12 [Source:VGNC Symbol;Acc:VGNC:86172]

Location

About this transcript

This transcript has 21 exons, is annotated with 29 domains and features and is associated with 620 variant alleles.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000003291.5	CAPN12-201	3357	718aa	ENSSSCP00000003209.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1S3I3 F1RI38	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000092123.1	CAPN12-202	3357	718aa	ENSSSCP00000075058.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4F714	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 21, Coding exons: 21, Transcript length: 3,357 bps, Translation length: 718 residues

Version

ENSSSCT00000092123.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.