Transcript: ENSSSCT00000062835.3 SCN2A-202

Description

sodium voltage-gated channel alpha subunit 2 [Source:HGNC Symbol;Acc:HGNC:10588]

Location

About this transcript

This transcript has 27 exons, is annotated with 72 domains and features, is associated with 2659 variant alleles and maps to 5 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000062835.3	SCN2A-202	8744	2006aa	ENSSSCP00000047650.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AUP2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000057011.3	SCN2A-201	8735	2006aa	ENSSSCP00000032477.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZLY4	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

Summary

Statistics

Exons: 27, Coding exons: 26, Transcript length: 8,744 bps, Translation length: 2,006 residues

Version

ENSSSCT00000062835.3

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.