Transcript: ENSSSCT00000009590.5 PCDH7-201

Description

protocadherin 7 [Source:NCBI gene (formerly Entrezgene);Acc:100520035]

Location

About this transcript

This transcript has 5 exons, is annotated with 74 domains and features, is associated with 11700 variant alleles and maps to 15 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000009590.5	PCDH7-201	4742	1246aa	ENSSSCP00000066584.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QXC2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000079445.2	PCDH7-202	4460	1068aa	ENSSSCP00000066938.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R8K0	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 4,742 bps, Translation length: 1,246 residues

Version

ENSSSCT00000009590.5

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Frameshift introns

Frameshift introns occur at intron number(s) 1, 2.