Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Transcript: ENSSSCT00000070623.2 VPS53-208

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Description

VPS53 subunit of GARP complex [Source:VGNC Symbol;Acc:VGNC:94861]

Location

Primary_assembly 12: 47,143,583-47,291,155 forward strand.

About this transcript

This transcript has 23 exons, is annotated with 15 domains and features, is associated with 6201 variant alleles and maps to 8 oligo probes.

Gene

This transcript is a product of gene ENSSSCG00000017812.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000070623.2	VPS53-208	5106	832aa	ENSSSCP00000070443.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A480L6G7 A0A8D2A5Z2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000041195.3	VPS53-204	5261	829aa	ENSSSCP00000050473.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B300 A0A8D0IMQ9	-
ENSSSCT00000066402.3	VPS53-205	5174	800aa	ENSSSCP00000051416.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B553	-
ENSSSCT00000039738.3	VPS53-206	5144	790aa	ENSSSCP00000052670.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B995	-
ENSSSCT00000091299.2	VPS53-209	5073	820aa	ENSSSCP00000068827.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R3Q6	-
ENSSSCT00000049947.3	VPS53-202	4895	707aa	ENSSSCP00000053483.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BAE9 A0A8D0LJZ8	-
ENSSSCT00000088867.2	VPS53-201	4823	683aa	ENSSSCP00000071748.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R3G9 A0A8D2A9H8	-
ENSSSCT00000019386.5	VPS53-210	4575	655aa	ENSSSCP00000018872.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RHI3	-
ENSSSCT00000054724.2	VPS53-203	2706	699aa	ENSSSCP00000059079.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BRE2	-
ENSSSCT00000079863.2	VPS53-207	2652	680aa	ENSSSCP00000063981.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QJ73	-

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Protein summary

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Protein domains for ENSSSCP00000070443.1

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