Transcript: ENSSSCT00000038766.2 PTPRA-204

Description

protein tyrosine phosphatase receptor type A [Source:VGNC Symbol;Acc:VGNC:96522]

Location

Primary_assembly 17: 32,638,497-32,797,104 reverse strand.

About this transcript

This transcript has 24 exons, is annotated with 38 domains and features, is associated with 4469 variant alleles and maps to 19 oligo probes.

Gene

This transcript is a product of gene ENSSSCG00000007166.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000038766.2	PTPRA-204	3146	809aa	ENSSSCP00000047761.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AV68 A0A8D1N2T6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000007839.5	PTPRA-203	3107	800aa	ENSSSCP00000007628.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0WN53 F1S8A4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000067724.2	PTPRA-202	2430	809aa	ENSSSCP00000068090.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1SF22 A0A5G2QVD8	-
ENSSSCT00000042650.3	PTPRA-201	2106	701aa	ENSSSCP00000033937.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZQS0	-

Transcript: ENSSSCT00000038766.2 PTPRA-204

Protein summary

Protein domains for ENSSSCP00000047761.2

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSSSCT00000038766.2 PTPRA-204

Protein summary

Protein domains for ENSSSCP00000047761.2

About Us

Get help

Our sister sites

Follow us