Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COL25A1 ENSSSCG00000039813

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Description

collagen type XXV alpha 1 chain [Source:VGNC Symbol;Acc:VGNC:109651]

Location

Primary_assembly 8: 112,867,664-113,334,097 forward strand.

Sscrofa11.1:CM000819.5

About this gene

This gene has 4 transcripts (splice variants), 138 orthologues and 36 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000057050.3	COL25A1-204	5726	695aa	ENSSSCP00000032351.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZLN3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000057645.3	COL25A1-203	5600	653aa	ENSSSCP00000036219.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZX69	-
ENSSSCT00000060299.3	COL25A1-201	5154	492aa	ENSSSCP00000032209.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZKW9	-
ENSSSCT00000049409.3	COL25A1-202	1287	403aa	ENSSSCP00000033136.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZNH9	-

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Summary

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